PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 84aa    MW: 9406.72 Da    PI: 9.8247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01070.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.82.9e-2538422103
        NAM  22 kvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                kv+++++++ + ++ vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+l++ +g lvg+k
  PK01070.1   3 KVSDSSFTC-KPVAVVDLNKSEPWDLPEKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEILRSgSGVLVGMK 84 
                677777777.77999************999999***************************************98566678887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.446184IPR003441NAC domain
SuperFamilySSF1019411.44E-26384IPR003441NAC domain
PfamPF023653.9E-62483IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
ASKVSDSSFT CKPVAVVDLN KSEPWDLPEK ASMGEKEWYF FSLKDRKYPT GLRTNRATEA  60
GYWKTTGKDK EILRSGSGVL VGMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-2238438117NAC domain-containing protein 19
4dul_A2e-2238438117NAC domain-containing protein 19
1ut7_B2e-2238438117NO APICAL MERISTEM PROTEIN
1ut7_A2e-2238438117NO APICAL MERISTEM PROTEIN
1ut4_B2e-2238438117NO APICAL MERISTEM PROTEIN
1ut4_A2e-2238438117NO APICAL MERISTEM PROTEIN
3swp_D2e-2238441120NAC domain-containing protein 19
3swp_C2e-2238441120NAC domain-containing protein 19
3swp_B2e-2238441120NAC domain-containing protein 19
3swp_A2e-2238441120NAC domain-containing protein 19
3swm_D2e-2238441120NAC domain-containing protein 19
3swm_C2e-2238441120NAC domain-containing protein 19
3swm_B2e-2238441120NAC domain-containing protein 19
3swm_A2e-2238441120NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252235.12e-44PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
RefseqXP_006353806.22e-44PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FRV47e-40NAC54_ARATH; Protein CUP-SHAPED COTYLEDON 1
TrEMBLK4DEA52e-44K4DEA5_SOLLC; Uncharacterized protein
TrEMBLM1A3A82e-44M1A3A8_SOLTU; Uncharacterized protein
STRINGSolyc12g036480.1.15e-44(Solanum lycopersicum)
STRINGPGSC0003DMT4000137536e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36893463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-43NAC domain containing protein 58